Commit 6c84fba0 authored by Willi Rath's avatar Willi Rath
Browse files

Merge branch '24-add-drifter-clim' into 'master' 

Resolve "Add drifter climatology"

Closes #24

See merge request !15
parents f7289388 a13c927a

DAC_drifter_climatology/meta.yaml

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repo_name: DAC_drifter_climatology



people:  Willi Rath (<wrath@geomar.de>)



http_path_remote: https://git.geomar.de/data/DAC_drifter_climatology



git_path_remote: git@git.geomar.de:data/DAC_drifter_climatology



repo_description: |

    A drifter-derived monthly climatology of global near-surface currents.



    <http://www.aoml.noaa.gov/phod/dac/dac_meanvel.php>



citations:

    - text: "Laurindo, L., A. Mariano, and R. Lumpkin, 2017: An improved

        near-surface velocity climatology for the global ocean from drifter

        observations Deep-Sea Res. I, 124, pp.73-92,

        doi:10.1016/j.dsr.2017.04.009 ."

      doi: "10.1016/j.dsr.2017.04.009"



prefixes: data doc



data:



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_annualmeans.nc"

      prefix: data

      file_name: drifter_annualmeans.nc

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_monthlymeans.nc"

      prefix: data

      file_name: drifter_monthlymeans.nc

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_variance.nc"

      prefix: data

      file_name: drifter_variance.nc

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_annualmeans.mat"

      prefix: data

      file_name: drifter_annualmeans.mat

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_monthlymeans.mat"

      prefix: data

      file_name: drifter_monthlymeans.mat

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_variance.mat"

      prefix: data

      file_name: drifter_variance.mat

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_annualmeans_ascii.dat"

      prefix: data

      file_name: drifter_annualmeans_ascii.dat

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_monthlymeans_ascii.dat"

      prefix: data

      file_name: drifter_monthlymeans_ascii.dat

      method: !!python/name:data_repo_renderer.CurlSingleFile



    - url: "http://www.aoml.noaa.gov/phod/dac/drifter_variance_ascii.dat"

      prefix: data

      file_name: drifter_variance_ascii.dat

      method: !!python/name:data_repo_renderer.CurlSingleFile



doc:



    - url: "http://www.aoml.noaa.gov/phod/dac/dac_meanvel.php"

      prefix: doc

      file_name: www.aoml.noaa.gov_phod_dac_dac_meanvel.html

      method: !!python/name:data_repo_renderer.CurlSingleFile



post_processing:



    - util/rename_and_transpose_netCDF_data.sh

DAC_drifter_climatology/util/rename_and_transpose_netCDF_data.sh

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#!/bin/bash



# define and export convert function

function rename_and_transpose_netcdf_data {

    file_name=$1

    echo "converting ${file_name}"

    ncrename -v Time,time ${file_name} ${file_name}_tmp \

        && mv ${file_name}_tmp ${file_name}

    ncrename -v Lat,latitude -v Lon,longitude ${file_name} ${file_name}_tmp \

        && mv ${file_name}_tmp ${file_name}

    ncpdq -a latitude,longitude ${file_name} ${file_name}_tmp \

        && mv ${file_name}_tmp ${file_name}

}

export -f rename_and_transpose_netcdf_data



# bunzip and convert using 3 threads

find data/ -type f -iname \*.nc -print0 | \

    xargs -0 -n1 -P3 -I {} bash -c "rename_and_transpose_netcdf_data {}"