Commit 032ea88e authored by Kosmas Hench's avatar Kosmas Hench

correct error in S10 and S11

parent cbc7183d
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--- ---
title: "Script repository" title: "Script repository"
subtitle: "Supplement to 'Association between vision and pigmentation genes during genomic divergence'" subtitle: "(Hench *et al.* 2018 supplement)"
author: "Kosmas Hench" author: "Kosmas Hench"
date: "`r Sys.Date()`" date: "`r Sys.Date()`"
documentclass: book documentclass: book
...@@ -13,7 +13,7 @@ description: "Scripts used to produce Figures and Supplementary Figures of 'Asso ...@@ -13,7 +13,7 @@ description: "Scripts used to produce Figures and Supplementary Figures of 'Asso
# Intro # Intro
This repository contains a *cleaned up* version of the scripts used in the Hench *et al.* 2018 paper. This repository contains a *cleaned up* version of the scripts used in the paper "*Association between vision and pigmentation genes during genomic divergence*".
It documents the entire progression from raw data to the final manuscript figures. It documents the entire progression from raw data to the final manuscript figures.
A visual overview of the process is given in [Workflow](workflow.html). A visual overview of the process is given in [Workflow](workflow.html).
......
--- ---
output: html_document output: html_document
editor_options: editor_options:
chunk_output_type: console chunk_output_type: console
--- ---
# Supplementary Figure 10 # Supplementary Figure 10
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--- ---
output: html_document output: html_document
editor_options: editor_options:
chunk_output_type: console chunk_output_type: console
--- ---
# Supplementary Figure 11 # Supplementary Figure 11
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
......
...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
......
...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
......
...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
...@@ -234,13 +234,13 @@ code > span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Inf ...@@ -234,13 +234,13 @@ code > span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Inf
<section class="normal" id="section-"> <section class="normal" id="section-">
<div id="header"> <div id="header">
<h1 class="title">Script repository</h1> <h1 class="title">Script repository</h1>
<h3 class="subtitle"><em>Supplement to ‘Association between vision and pigmentation genes during genomic divergence’</em></h3> <h3 class="subtitle"><em>(Hench <em>et al.</em> 2018 supplement)</em></h3>
<h4 class="author"><em>Kosmas Hench</em></h4> <h4 class="author"><em>Kosmas Hench</em></h4>
<h4 class="date"><em>2018-07-30</em></h4> <h4 class="date"><em>2018-08-03</em></h4>
</div> </div>
<div id="intro" class="section level1"> <div id="intro" class="section level1">
<h1><span class="header-section-number">1</span> Intro</h1> <h1><span class="header-section-number">1</span> Intro</h1>
<p>This repository contains a <em>cleaned up</em> version of the scripts used in the Hench <em>et al.</em> 2018 paper. It documents the entire progression from raw data to the final manuscript figures.</p> <p>This repository contains a <em>cleaned up</em> version of the scripts used in the paper “<em>Association between vision and pigmentation genes during genomic divergence</em>. It documents the entire progression from raw data to the final manuscript figures.</p>
<p>A visual overview of the process is given in <a href="workflow.html">Workflow</a>.</p> <p>A visual overview of the process is given in <a href="workflow.html">Workflow</a>.</p>
<div id="data" class="section level2"> <div id="data" class="section level2">
<h2><span class="header-section-number">1.1</span> Data</h2> <h2><span class="header-section-number">1.1</span> Data</h2>
......
--- ---
title: "Script repository" title: "Script repository"
subtitle: "Supplement to 'Association between vision and pigmentation genes during genomic divergence'" subtitle: "(Hench *et al.* 2018 supplement)"
author: "Kosmas Hench" author: "Kosmas Hench"
date: "2018-07-30" date: "2018-08-03"
documentclass: book documentclass: book
bibliography: [book.bib] bibliography: [book.bib]
biblio-style: apalike biblio-style: apalike
...@@ -13,7 +13,7 @@ description: "Scripts used to produce Figures and Supplementary Figures of 'Asso ...@@ -13,7 +13,7 @@ description: "Scripts used to produce Figures and Supplementary Figures of 'Asso
# Intro # Intro
This repository contains a *cleaned up* version of the scripts used in the Hench *et al.* 2018 paper. This repository contains a *cleaned up* version of the scripts used in the paper "*Association between vision and pigmentation genes during genomic divergence*".
It documents the entire progression from raw data to the final manuscript figures. It documents the entire progression from raw data to the final manuscript figures.
A visual overview of the process is given in [Workflow](workflow.html). A visual overview of the process is given in [Workflow](workflow.html).
......
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
......
...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
......
...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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...@@ -25,7 +25,7 @@ ...@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench"> <meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-07-30"> <meta name="date" content="2018-08-03">
<meta name="viewport" content="width=device-width, initial-scale=1"> <meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes"> <meta name="apple-mobile-web-app-capable" content="yes">
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