Commit 24f7697f authored by Kosmas Hench's avatar Kosmas Hench

Figgure one corrected

parent 489dd18f
......@@ -196,7 +196,7 @@ fstdata <- read.csv('../../2_output/08_popGen/05_fst/genome_wide_weighted_mean_f
pairclass=paste(pop1,pop2,sep='-'))
# defining the pairwise color palette
clrP <- c('#fb8620','#1b519c','#d93327')
clrP <- c('#1b519c','#fb8620','#d93327')
```
And than generate the bar plot:
......
......@@ -92,7 +92,7 @@ fstdata <- read.csv('../../2_output/08_popGen/05_fst/genome_wide_weighted_mean_f
pop1 = substr(as.character(pair),1,1),
pop2 = substr(as.character(pair),3,3),
pairclass=paste(pop1,pop2,sep='-'))
clrP <- c('#fb8620','#1b519c','#d93327')
clrP <- c('#1b519c','#fb8620','#d93327')
p5 <- ggplot(fstdata,aes(x=x,y=fst,fill=pairclass))+
geom_bar(stat='identity')+
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......@@ -201,7 +201,7 @@ fstdata <- read.csv('../../2_output/08_popGen/05_fst/genome_wide_weighted_mean_f
pairclass=paste(pop1,pop2,sep='-'))
# defining the pairwise color palette
clrP <- c('#fb8620','#1b519c','#d93327')
clrP <- c('#1b519c','#fb8620','#d93327')
```
And than generate the bar plot:
......
......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
......@@ -380,7 +380,7 @@ ccc&lt;-<span class="kw">rgb</span>(<span class="dv">0</span>,.<span class="dv">
<span class="dt">pairclass=</span><span class="kw">paste</span>(pop1,pop2,<span class="dt">sep=</span><span class="st">&#39;-&#39;</span>))
<span class="co"># defining the pairwise color palette</span>
clrP &lt;-<span class="st"> </span><span class="kw">c</span>(<span class="st">&#39;#fb8620&#39;</span>,<span class="st">&#39;#1b519c&#39;</span>,<span class="st">&#39;#d93327&#39;</span>)</code></pre></div>
clrP &lt;-<span class="st"> </span><span class="kw">c</span>(<span class="st">&#39;#1b519c&#39;</span>,<span class="st">&#39;#fb8620&#39;</span>,<span class="st">&#39;#d93327&#39;</span>)</code></pre></div>
<p>And than generate the bar plot:</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">p5 &lt;-<span class="st"> </span><span class="kw">ggplot</span>(fstdata,<span class="kw">aes</span>(<span class="dt">x=</span>x,<span class="dt">y=</span>fst,<span class="dt">fill=</span>pairclass))<span class="op">+</span>
<span class="st"> </span><span class="co"># bar layer</span>
......
......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
......
......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
......
......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
......
......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
......@@ -251,7 +251,7 @@ code > span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Inf
<h1 class="title">Script repository</h1>
<h3 class="subtitle"><em>(Hench <em>et al.</em> supplement)</em></h3>
<h4 class="author"><em>Kosmas Hench</em></h4>
<h4 class="date"><em>2018-12-10</em></h4>
<h4 class="date"><em>2018-12-12</em></h4>
</div>
<div id="intro" class="section level1">
<h1><span class="header-section-number">1</span> Intro</h1>
......
......@@ -2,7 +2,7 @@
title: "Script repository"
subtitle: "(Hench *et al.* supplement)"
author: "Kosmas Hench"
date: "2018-12-10"
date: "2018-12-12"
documentclass: book
bibliography: [book.bib]
biblio-style: apalike
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......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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......@@ -25,7 +25,7 @@
<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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<meta name="author" content="Kosmas Hench">
<meta name="date" content="2018-12-10">
<meta name="date" content="2018-12-12">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="apple-mobile-web-app-capable" content="yes">
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