Commit 49156497 authored by Kosmas Hench's avatar Kosmas Hench
Browse files

update 2.2.8.1 LD scripts

parent c65d7278

2_reSeq-scripts/2-2_popGen/06_LD_spotlight/00_templates/2.2.8.1.rawLD_single_temp.sh

+1 −1
Original line number Original line Diff line number Diff line
@@ -15,4 +15,4 @@ vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \ 
  --interchrom-hap-r2 \

  --interchrom-hap-r2 \

  --out spotlight.XXnameXX

  --out spotlight.XXnameXX





gzip XXnameXX.interchrom.hap.ld
 
gzip spotlight.XXnameXX.interchrom.hap.ld

2_reSeq-scripts/2-2_popGen/06_LD_spotlight/2.2.8.1.rawLD_global.sh

+1 −1
Original line number Original line Diff line number Diff line
@@ -14,4 +14,4 @@ vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \ 
  --interchrom-hap-r2 \

  --interchrom-hap-r2 \

  --out spotlight.global

  --out spotlight.global





gzip global.interchrom.hap.ld
 
gzip spotlight.global.interchrom.hap.ld