update 2.2.9 selscan scripts (6c2541b2) · Commits · open-source-code / hamlets_ILD_vision_pigmentation

2_reSeq-scripts/2-2_popGen/2.2.9.3.merge_and_slide_iHH12.sh

+12 −0

Original line number	Diff line number	Diff line
		@@ -27,3 +27,15 @@ for k in nig pue uni nigbel puebel unibel nighon puehon unihon nigboc pueboc uni
		END{for(i in A){print H[i],(G[i]-1)slide,(G[i]-1)slide+window,B[i],A[i]/B[i],G[i],k+1,B[i]/window,C[i]/B[i];k++}}' >> selscan_merge_10kb/$k.selscan.ihh12.10k.1k.smooth.out
		done
		done

		cd selscan_merge_10kb

		for k in pue-nig pue-uni nig-uni puebel-nigbel puebel-unibel nigbel-unibel puehon-nighon puehon-unihon nighon-unihon pueboc-nigboc pueboc-uniboc nigboc-uniboc; do
		echo $k
		for j in {01..24};do
		LG="LG"$j;
		echo $LG;
		mkdir -p $LG;
		head -n 1 $k.selscan.ihh12.10k.1k.smooth.out > $LG/iHH12.$k.pue-nig.selscan-$LG-10kb-1kb.txt
		done
		done
		No newline at end of file

+13 −1

Original line number	Diff line number	Diff line
		#PBS -l elapstim_req=00:20:00
		#PBS -l elapstim_req=01:20:00
		#PBS -l memsz_job=80gb
		#PBS -b 1
		#PBS -l cpunum_job=1
		@@ -25,3 +25,15 @@ for k in pue-nig pue-uni nig-uni puebel-nigbel puebel-unibel nigbel-unibel pueho
		END{for(i in A){print H[i],(G[i]-1)slide,(G[i]-1)slide+window,B[i],A[i]/B[i],G[i],k+1,B[i]/window,C[i]/B[i];k++}}' >> selscan_merge_10kb/$k.selscan.xpEHH.10k.1k.smooth.out
		done
		done

		cd selscan_merge_10kb

		for k in pue-nig pue-uni nig-uni puebel-nigbel puebel-unibel nigbel-unibel puehon-nighon puehon-unihon nighon-unihon pueboc-nigboc pueboc-uniboc nigboc-uniboc; do
		echo $k
		for j in {01..24};do
		LG="LG"$j;
		echo $LG;
		mkdir -p $LG;
		head -n 1 $k.selscan.xpEHH.10k.1k.smooth.out > $LG/xpEHH.$k.pue-nig-$LG-10kb-1kb.txt
		done
		done
		No newline at end of file