omit set_reduce_2xs.gz

ab962a6c · Kosmas Hench · aa182a42 · ab962a6c · ab962a6c
Commit ab962a6c authored Jul 30, 2018 by Kosmas Hench
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Showing with 4 additions and 2 deletions

.gitignore .gitignore +2 -1

1_assembly_scripts/1-1_assambly_prep/1.1.2.0.subset.sh 1_assembly_scripts/1-1_assambly_prep/1.1.2.0.subset.sh +2 -1

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--- a/.gitignore
+++ b/.gitignore
@@ -2,8 +2,9 @@
 .Rhistory
 .RData
 .Ruserdata
+0_data/0_resources/set_reduce_2xs.gz
 1-output
 2_output/08_popGen/*
 2_output/07_phased_variants/*
 !2_output/08_popGen/00_synteny
-2_output/09_expression/*
\ No newline at end of file
+2_output/09_expression/*
--- a/1_assembly_scripts/1-1_assambly_prep/1.1.2.0.subset.sh
+++ b/1_assembly_scripts/1-1_assambly_prep/1.1.2.0.subset.sh
@@ -12,5 +12,6 @@ gunzip set_reduce_2xs.gz

 cd $WORK/1-output/01_PB_prep

+# the file set_reduce_2xs is too large for the github repository, if neded please contat the authors
 seqtk subseq ../04_libs_clean/04_clean_lib_2x.1.fq $WORK/0_data/0_resources/set_reduce_2xs > 66pct_2x.1.fq
-seqtk subseq ../04_libs_clean/04_clean_lib_2x.2.fq $WORK/0_data/0_resources/set_reduce_2xs > 66pct_2x.2.fq									 
+seqtk subseq ../04_libs_clean/04_clean_lib_2x.2.fq $WORK/0_data/0_resources/set_reduce_2xs > 66pct_2x.2.fq