Commit c65d7278 authored by Kosmas Hench's avatar Kosmas Hench

change in 2.2.5.4 genome wide fst pan

parent e4900339
......@@ -4,25 +4,25 @@
#PBS -l cpunum_job=1
#PBS -N fstGlobal
#PBS -q clexpress
#PBS -o 2.2.5.4.fst_gw_bel.stdout
#PBS -e 2.2.5.4.fst_gw_bel.stderr
#PBS -o 2.2.5.4.fst_gw_pan.stdout
#PBS -e 2.2.5.4.fst_gw_pan.stderr
cd $WORK/2_output/08_popGen/05_fst
vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigbel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_puebel.pop \
--out fst.gw.nigbel-puebel
--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigboc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_pueboc.pop \
--out fst.gw.nigboc-pueboc
vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigbel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_unibel.pop \
--out fst.gw.nigbel-unibel
--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigboc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_uniboc.pop \
--out fst.gw.nigboc-uniboc
vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_puebel.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_unibel.pop \
--out fst.gw.puebel-unibel
\ No newline at end of file
--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_pueboc.pop \
--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_uniboc.pop \
--out fst.gw.pueboc-uniboc
\ No newline at end of file
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