change in 2.2.5.4 genome wide fst pan

2_reSeq-scripts/2-2_popGen/2.2.5.4.fst_gw.pan.sh

@@ -4,25 +4,25 @@
 #PBS -l cpunum_job=1
 #PBS -N fstGlobal
 #PBS -q clexpress
-#PBS -o 2.2.5.4.fst_gw_bel.stdout
-#PBS -e 2.2.5.4.fst_gw_bel.stderr
+#PBS -o 2.2.5.4.fst_gw_pan.stdout
+#PBS -e 2.2.5.4.fst_gw_pan.stderr
 
 cd $WORK/2_output/08_popGen/05_fst
 
 vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
-	--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigbel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_puebel.pop \
-	--out fst.gw.nigbel-puebel
+	--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigboc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_pueboc.pop \
+	--out fst.gw.nigboc-pueboc
 
 vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
-	--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigbel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_unibel.pop \
-	--out fst.gw.nigbel-unibel
+	--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_nigboc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_uniboc.pop \
+	--out fst.gw.nigboc-uniboc
 
 vcftools --gzvcf $WORK/2_output/07_phased_variants/6_phased_mac2.vcf.gz \
-	--keep $WORK/0_data/0_resources/vcfpops/vcftools_bel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_puebel.pop \
-	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_unibel.pop \
-	--out fst.gw.puebel-unibel
\ No newline at end of file
+	--keep $WORK/0_data/0_resources/vcfpops/vcftools_boc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_pueboc.pop \
+	--weir-fst-pop $WORK/0_data/0_resources/vcfpops/vcftools_uniboc.pop \
+	--out fst.gw.pueboc-uniboc
\ No newline at end of file