conda_environments issueshttps://git.geomar.de/python/conda_environments/-/issues2017-10-24T12:44:12Zhttps://git.geomar.de/python/conda_environments/-/issues/16py3_std at HLRN2017-10-24T12:44:12ZJan Klaus Rieckpy3_std at HLRNWhile py2_std works really well at HLRN during the last weeks, py3_std has some problems. Starting the kernel from the notebook one quickly gets a connection but then the kernel is never ready...Basically the same problem that has always...While py2_std works really well at HLRN during the last weeks, py3_std has some problems. Starting the kernel from the notebook one quickly gets a connection but then the kernel is never ready...Basically the same problem that has always been an issue with HLRN but for py2_std it does not seem to be an issue anymore. (Tried all the usual workarounds, deleting old jobs and kernels and activating the environment at HLRN before <- no problems there, just from the notebook)
Sorry for being so vague, but I couldn't pin it down any furtherhttps://git.geomar.de/python/conda_environments/-/issues/15Spyder not working on py2_std on taurus?2017-10-02T10:40:15ZWilli RathSpyder not working on py2_std on taurus?Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/14HTTPS-Error on Nesh2017-05-17T13:15:46ZWilli RathHTTPS-Error on Nesh(Currently preventing fix of #13 on Nesh.)
Add nesh envs to `locations.ini` and use SSH with agent forwarding instead.(Currently preventing fix of #13 on Nesh.)
Add nesh envs to `locations.ini` and use SSH with agent forwarding instead.Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/13netCDF4 in py3_std on HLRN is not working2017-10-02T10:40:15ZJan Klaus RiecknetCDF4 in py3_std on HLRN is not working```python
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-5-f731da2de255> in <module>()
----> 1 import netCDF4
/home/...```python
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-5-f731da2de255> in <module>()
----> 1 import netCDF4
/home/b/shkifmwr/TM/software/miniconda3_20170516/envs/py3_std/lib/python3.6/site-packages/netCDF4/__init__.py in <module>()
1 # init for netCDF4. package
2 # Docstring comes from extension module _netCDF4.
----> 3 from ._netCDF4 import *
4 # Need explicit imports for names beginning with underscores
5 from ._netCDF4 import __doc__, __pdoc__
ImportError: libmfhdf.so.0: cannot open shared object file: No such file or directory
```https://git.geomar.de/python/conda_environments/-/issues/12Fortran magic2017-10-02T10:40:15ZRafael AbelFortran magichttps://github.com/mgaitan/fortran_magic
DANKE :)https://github.com/mgaitan/fortran_magic
DANKE :)Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/11Add eofs2017-04-18T10:32:49ZWilli RathAdd eofshttp://ajdawson.github.io/eofs/ says that there is a conda-forge package for Python 2 and 3.
(cc: @patrick-wagner )http://ajdawson.github.io/eofs/ says that there is a conda-forge package for Python 2 and 3.
(cc: @patrick-wagner )Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/10Pymatlab2017-04-18T10:31:19ZRafael AbelPymatlabHallo Willi,
da man ja immerwieder mal das problem hat matlab routinen zu haben, die irgendwas fuer einen erledigen und keine Lust die komplett umzuschreiben oder das gar nicht so einfach ist...
Dann scheint pymatlab eine alternative zu ...Hallo Willi,
da man ja immerwieder mal das problem hat matlab routinen zu haben, die irgendwas fuer einen erledigen und keine Lust die komplett umzuschreiben oder das gar nicht so einfach ist...
Dann scheint pymatlab eine alternative zu sein. Wir haben ja matlab versionen auf der NESH und anderen systemen...
Koenntest du pymatlab bitte installieren auf der NESH?
VIelen Dank fuer Deine Hilfe!
https://pypi.python.org/pypi/pymatlab
Beste Gruesse,
RafaelWilli RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/9aospy2017-04-18T10:31:26ZAnnika DrewsaospyHallo Willi,
kannst du bitte ``aospy`` für die Python2.7 Umgebung installieren?
Danke!
AnnikaHallo Willi,
kannst du bitte ``aospy`` für die Python2.7 Umgebung installieren?
Danke!
AnnikaWilli RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/8Pin Python2 to 2.7.122017-04-18T10:31:33ZWilli RathPin Python2 to 2.7.12On taurus, importing `matplotlib` may throw a `NameError: name 'PROTOCOL_TLS' is not defined`.
https://github.com/owtf/owtf/issues/815 suggests updating the distro packages and PyOpenSSL. As a hotfix, pinning to Python 2.7.12 in `py2_s...On taurus, importing `matplotlib` may throw a `NameError: name 'PROTOCOL_TLS' is not defined`.
https://github.com/owtf/owtf/issues/815 suggests updating the distro packages and PyOpenSSL. As a hotfix, pinning to Python 2.7.12 in `py2_std` on taurus helped.Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/7Pin Matplotlib everywhere2017-03-31T12:51:58ZWilli RathPin Matplotlib everywhereIn python/doc#2, we found that Matplotlib 2.0 behaves weird with LaTeX output. As this is only one of many subtleties w.r.t. Matplotlib 2.0, pin it to 1.5.3 everywhere for now.In python/doc#2, we found that Matplotlib 2.0 behaves weird with LaTeX output. As this is only one of many subtleties w.r.t. Matplotlib 2.0, pin it to 1.5.3 everywhere for now.Willi RathWilli Rath2017-03-31https://git.geomar.de/python/conda_environments/-/issues/6pyNGL2017-03-20T11:58:05ZAnnika DrewspyNGLI am missing the module ``Ngl`` in ``py2_std``. Can it be added?
Thank you!I am missing the module ``Ngl`` in ``py2_std``. Can it be added?
Thank you!Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/5TeX?2017-03-30T15:23:41ZWilli RathTeX?https://github.com/conda-forge/texlive-core-feedstock seems to lead to a proper LaTeX-Feedstock.
@annika-drews tried
```python
import matplotlib as mpl
mpl.use("pgf")
fontsize=10
width = 25/2.54 # cm to inch usually 10
he...https://github.com/conda-forge/texlive-core-feedstock seems to lead to a proper LaTeX-Feedstock.
@annika-drews tried
```python
import matplotlib as mpl
mpl.use("pgf")
fontsize=10
width = 25/2.54 # cm to inch usually 10
height = 7/2.54
pgf_with_pdflatex = {
"pgf.texsystem": "pdflatex",
"pgf.preamble": [
r"\usepackage[utf8x]{inputenc}",
r"\usepackage[T1]{fontenc}",
r"\usepackage{lmodern}",
# r"\usepackage{siunitx}"
],
"axes.labelsize": fontsize, # LaTeX default is 10pt font.
"font.size": fontsize,
"legend.fontsize": fontsize,
"xtick.labelsize": fontsize,
"ytick.labelsize": fontsize,
"lines.linewidth": 1,
"figure.figsize" : [width, height],
# "savefig.bbox" : 'tight',
# "savefig.pad_inches" : 0.01
}
mpl.rcParams.update(pgf_with_pdflatex)
```
and failed with `py2_std` on `taurus`.Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/4cf_units for conda2017-03-07T11:19:18ZRafael Abelcf_units for condaHi Willi,
koenntest du bitte fuer py_std2 "cf_units" hinzufuegen?
Vielen dank!
Beste Gruesse
RafaelHi Willi,
koenntest du bitte fuer py_std2 "cf_units" hinzufuegen?
Vielen dank!
Beste Gruesse
Rafaelhttps://git.geomar.de/python/conda_environments/-/issues/3seawater module at HLRN2017-03-01T16:22:10ZJan Klaus Rieckseawater module at HLRNThe seawater module is not installed in the `py2_std` and `py3_std` environments on HLRNThe seawater module is not installed in the `py2_std` and `py3_std` environments on HLRNhttps://git.geomar.de/python/conda_environments/-/issues/2Be able to pick envs in setup script2017-02-19T14:01:48ZWilli RathBe able to pick envs in setup scriptAdd input args to setup script which allow for picking envs to be installed.Add input args to setup script which allow for picking envs to be installed.Willi RathWilli Rathhttps://git.geomar.de/python/conda_environments/-/issues/1Download all cartopy features2017-02-05T19:21:56ZWilli RathDownload all cartopy featuresSee: https://github.com/conda-forge/cartopy-feedstock/issues/27
Implement this as a script for now.See: https://github.com/conda-forge/cartopy-feedstock/issues/27
Implement this as a script for now.Willi RathWilli Rath