Commit 6bb3154b authored by Willi Rath's avatar Willi Rath
Browse files

Merge branch 'develop' of git.geomar.de:python/conda_environments into develop

parents 31063fba cf409115

.gitlab-ci.yml

+2 −2
Original line number Diff line number Diff line 
image: continuumio/miniconda3:latest

image: continuumio/miniconda3:4.3.27



variables:

  DOCKER_DRIVER: overlay
@@ -9,4 +9,4 @@ test: 
    - source activate root

    - target_dir=${CONDA_PREFIX}

    - shopt -s extglob

    - ./update_anaconda.sh ${target_dir} envs/!(monitoring_gallery).yml
 
    - ./update_anaconda.sh ${target_dir}  envs/!(*@(monitoring_gallery|py2_parcels)).yml

README.md

+11 −0
Original line number Diff line number Diff line
@@ -42,6 +42,17 @@ source deactivate 


(Nesh: `smomw122`; HLRN: `shkifmwr`; Geomar: `wrath`)



## A note on stability



The environments are updated frequently (but irregularly).  This comes with a

catch:  Updating an environment potentially introduces problems that are not

immediately visible when testing the updated installation.  To at least

partially make up for this, the state of the environments _before_ an update is

copied to `<willis_home_dir>/TM/software/miniconda3_previous`.  So if you

suddenly run into problems in an environment that used to work.  Switch to

`miniconda3_previous` and check if this helps.  If you find problems, please

[file an issue here][issues].



## Using the environments on nb.geomar.de



There is an installer which allows for adding kernels using these environments

_env_templates/monitoring.yml

+2 −1
Original line number Diff line number Diff line
@@ -20,6 +20,7 @@ dependencies: 
  - numpy

  - pandas

  - seaborn

  - widgetsnbextension=3.1.0

  - xarray

  - pip:

     - "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"

     - "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"

_env_templates/py2_parcels.yml

0 → 100644
+11 −0
Original line number Diff line number Diff line 
name: py2_parcels

channels:

  - {conda-forge}

  - {anaconda}

dependencies:

  - python=2.7

  - basemap

  - basemap-data-hires

  - jupyter

  - widgetsnbextension=3.1.0

  - parcels

_env_templates/py2_pyngl.yml

deleted100644 → 0
+0 −38
Original line number Diff line number Diff line 
name: py2_pyngl

channels:

  - {conda-forge}

  - {willirath}

  - {anaconda}

dependencies:

  - python=2.7

  - anaconda-client

  - aospy

  - basemap

  - cartopy

  - cf_units

  - cmocean

  - dask

  - eofs

  - fortran-magic

  - git

  - git-lfs

  - haversine

  - hdf5

  - ipython

  - jupyter

  - line_profiler

  - matplotlib

  - mtspec

  - nco

  - netCDF4=1.2.8

  - numpy

  - pandas

  - pyngl

  - pynio

  - pytables

  - seaborn

  - seawater

  - xarray

  - pip:

      - pymatlab

      - "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"