Commit 6bb3154b authored by Willi Rath's avatar Willi Rath

Merge branch 'develop' of git.geomar.de:python/conda_environments into develop

parents 31063fba cf409115
Pipeline #1317 passed with stage
in 23 minutes and 58 seconds
image: continuumio/miniconda3:latest
image: continuumio/miniconda3:4.3.27
variables:
DOCKER_DRIVER: overlay
......@@ -9,4 +9,4 @@ test:
- source activate root
- target_dir=${CONDA_PREFIX}
- shopt -s extglob
- ./update_anaconda.sh ${target_dir} envs/!(monitoring_gallery).yml
- ./update_anaconda.sh ${target_dir} envs/!(*@(monitoring_gallery|py2_parcels)).yml
......@@ -42,6 +42,17 @@ source deactivate
(Nesh: `smomw122`; HLRN: `shkifmwr`; Geomar: `wrath`)
## A note on stability
The environments are updated frequently (but irregularly). This comes with a
catch: Updating an environment potentially introduces problems that are not
immediately visible when testing the updated installation. To at least
partially make up for this, the state of the environments _before_ an update is
copied to `<willis_home_dir>/TM/software/miniconda3_previous`. So if you
suddenly run into problems in an environment that used to work. Switch to
`miniconda3_previous` and check if this helps. If you find problems, please
[file an issue here][issues].
## Using the environments on nb.geomar.de
There is an installer which allows for adding kernels using these environments
......
......@@ -20,6 +20,7 @@ dependencies:
- numpy
- pandas
- seaborn
- widgetsnbextension=3.1.0
- xarray
- pip:
- "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"
- "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"
name: py2_parcels
channels:
- {conda-forge}
- {anaconda}
dependencies:
- python=2.7
- basemap
- basemap-data-hires
- jupyter
- widgetsnbextension=3.1.0
- parcels
name: py2_pyngl
channels:
- {conda-forge}
- {willirath}
- {anaconda}
dependencies:
- python=2.7
- anaconda-client
- aospy
- basemap
- cartopy
- cf_units
- cmocean
- dask
- eofs
- fortran-magic
- git
- git-lfs
- haversine
- hdf5
- ipython
- jupyter
- line_profiler
- matplotlib
- mtspec
- nco
- netCDF4=1.2.8
- numpy
- pandas
- pyngl
- pynio
- pytables
- seaborn
- seawater
- xarray
- pip:
- pymatlab
- "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,6 +39,7 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- pymatlab
- "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,5 +39,6 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- "git+{git_protocol}git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -5,5 +5,6 @@ channels:
dependencies:
- python=3
- cartopy
- conda-mirror
- git
- git-lfs
......@@ -20,6 +20,7 @@ dependencies:
- numpy
- pandas
- seaborn
- widgetsnbextension=3.1.0
- xarray
- pip:
- "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
name: py2_parcels
channels:
- file://home/b/shkifmwr/TM/data/conda_mirror/conda-forge_local_mirror/
- file://home/b/shkifmwr/TM/data/conda_mirror/anaconda_local_mirror/
dependencies:
- python=2.7
- basemap
- basemap-data-hires
- jupyter
- widgetsnbextension=3.1.0
- parcels
name: py2_pyngl
channels:
- file://home/b/shkifmwr/TM/data/conda_mirror/conda-forge_local_mirror/
- file://home/b/shkifmwr/TM/data/conda_mirror/willirath_local_mirror/
- file://home/b/shkifmwr/TM/data/conda_mirror/anaconda_local_mirror/
dependencies:
- python=2.7
- anaconda-client
- aospy
- basemap
- cartopy
- cf_units
- cmocean
- dask
- eofs
- fortran-magic
- git
- git-lfs
- haversine
- hdf5
- ipython
- jupyter
- line_profiler
- matplotlib
- mtspec
- nco
- netCDF4=1.2.8
- numpy
- pandas
- pyngl
- pynio
- pytables
- seaborn
- seawater
- xarray
- pip:
- pymatlab
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,6 +39,7 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- pymatlab
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,5 +39,6 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -5,5 +5,6 @@ channels:
dependencies:
- python=3
- cartopy
- conda-mirror
- git
- git-lfs
......@@ -20,6 +20,7 @@ dependencies:
- numpy
- pandas
- seaborn
- widgetsnbextension=3.1.0
- xarray
- pip:
- "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
name: py2_parcels
channels:
- https://conda.anaconda.org/conda-forge
- https://repo.continuum.io/pkgs/free
dependencies:
- python=2.7
- basemap
- basemap-data-hires
- jupyter
- widgetsnbextension=3.1.0
- parcels
name: py2_pyngl
channels:
- https://conda.anaconda.org/conda-forge
- https://conda.anaconda.org/willirath
- https://repo.continuum.io/pkgs/free
dependencies:
- python=2.7
- anaconda-client
- aospy
- basemap
- cartopy
- cf_units
- cmocean
- dask
- eofs
- fortran-magic
- git
- git-lfs
- haversine
- hdf5
- ipython
- jupyter
- line_profiler
- matplotlib
- mtspec
- nco
- netCDF4=1.2.8
- numpy
- pandas
- pyngl
- pynio
- pytables
- seaborn
- seawater
- xarray
- pip:
- pymatlab
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,6 +39,7 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- pymatlab
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,5 +39,6 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- "git+ssh://git@git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -5,5 +5,6 @@ channels:
dependencies:
- python=3
- cartopy
- conda-mirror
- git
- git-lfs
......@@ -20,6 +20,7 @@ dependencies:
- numpy
- pandas
- seaborn
- widgetsnbextension=3.1.0
- xarray
- pip:
- "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
name: py2_parcels
channels:
- file://media/wrath/wrath_003/conda_mirror/conda-forge_local_mirror/
- file://media/wrath/wrath_003/conda_mirror/anaconda_local_mirror/
dependencies:
- python=2.7
- basemap
- basemap-data-hires
- jupyter
- widgetsnbextension=3.1.0
- parcels
name: py2_pyngl
channels:
- file://media/wrath/wrath_003/conda_mirror/conda-forge_local_mirror/
- file://media/wrath/wrath_003/conda_mirror/willirath_local_mirror/
- file://media/wrath/wrath_003/conda_mirror/anaconda_local_mirror/
dependencies:
- python=2.7
- anaconda-client
- aospy
- basemap
- cartopy
- cf_units
- cmocean
- dask
- eofs
- fortran-magic
- git
- git-lfs
- haversine
- hdf5
- ipython
- jupyter
- line_profiler
- matplotlib
- mtspec
- nco
- netCDF4=1.2.8
- numpy
- pandas
- pyngl
- pynio
- pytables
- seaborn
- seawater
- xarray
- pip:
- pymatlab
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,6 +39,7 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- pymatlab
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,5 +39,6 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -5,5 +5,6 @@ channels:
dependencies:
- python=3
- cartopy
- conda-mirror
- git
- git-lfs
......@@ -20,6 +20,7 @@ dependencies:
- numpy
- pandas
- seaborn
- widgetsnbextension=3.1.0
- xarray
- pip:
- "git+https://github.com/willirath/xarray.git@6f5e30f3a2f8ca907f0fd91bcd571e7d98027896#egg=xarray_wrath_allow_ploting_datetime"
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
name: py2_parcels
channels:
- https://conda.anaconda.org/conda-forge
- https://repo.continuum.io/pkgs/free
dependencies:
- python=2.7
- basemap
- basemap-data-hires
- jupyter
- widgetsnbextension=3.1.0
- parcels
name: py2_pyngl
channels:
- https://conda.anaconda.org/conda-forge
- https://conda.anaconda.org/willirath
- https://repo.continuum.io/pkgs/free
dependencies:
- python=2.7
- anaconda-client
- aospy
- basemap
- cartopy
- cf_units
- cmocean
- dask
- eofs
- fortran-magic
- git
- git-lfs
- haversine
- hdf5
- ipython
- jupyter
- line_profiler
- matplotlib
- mtspec
- nco
- netCDF4=1.2.8
- numpy
- pandas
- pyngl
- pynio
- pytables
- seaborn
- seawater
- xarray
- pip:
- pymatlab
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,6 +39,7 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- pymatlab
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -18,6 +18,7 @@ dependencies:
- fortran-magic
- git
- git-lfs
- gsw
- haversine
- hdf5
- ipython
......@@ -26,6 +27,7 @@ dependencies:
- jupyter
- line_profiler
- matplotlib
- memory_profiler
- mtspec
- nco
- netCDF4=1.2.8
......@@ -37,5 +39,6 @@ dependencies:
- seawater
- spyder
- xarray
- widgetsnbextension=3.1.0
- pip:
- "git+https://git.geomar.de/open-source/cartopy_offlinedata.git@master"
......@@ -5,5 +5,6 @@ channels:
dependencies:
- python=3
- cartopy
- conda-mirror
- git
- git-lfs
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