NESH dask-jobqueue, qsub error
I have an example script, where I try to run an analysis on the nesh cluster using a scheduler. I code most of the code from @swantje-bastin. It does not work for me, with an error related to qsub. I start jupyterlab from a local machine using ssh-tunnel to nesh. When prompting the same command in the shell on nesh, the job is successfully submitted and run.
I did a complete new installation of miniconda and environment:
curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o Miniconda3.sh
bash Miniconda3.sh -b -p ${HOME}/miniconda3
${HOME}/miniconda3/bin/conda init bash
${HOME}/miniconda3/bin/conda config --set auto_activate_base false
source ${HOME}/miniconda3/bin/activate
conda install -n base jupyterlab nb_conda_kernels
# recommended from geomar git side + dependencies for xorca
conda create -n py3_xorca -c conda-forge python=3 aospy basemap basemap-data-hires cartopy cdo cf_units cftime cmocean coverage dask dask-jobqueue distributed eofs flake8 fortran-magic git git-lfs gsw haversine hdf5 ipython iris iris-sample-data jupyter line_profiler matplotlib memory_profiler nco netCDF4 numpy pandas pytest pytest-cov pytables python-cdo scikit-learn scipy seaborn seawater xarray xgcm zarr ipykernel
conda activate py3_xorca
pip install junix
pip install git+https://github.com/willirath/xorca.git@master
Any ideas?