kernel not usable
I created a new environment py3_testxorca
on HLRN Berlin just like here #10 (comment 11386) and now a kernel called [conda env:py3_testxorca]
shows up in my jupyter lab launcher (jupyter lab runs on bdata1) but it is not usable. (Note that I created the usual py3_std
environment in the same way and I can use it in jupyter lab without any problems... Actually my py3_testxorca
is identical to the py3_std
in the comment mentioned above.)
I now got an error message associated with this. It seems to be (again) related to GLIBC
[I 09:57:28.242 LabApp] Kernel started: f7ef7c7d-6182-4d61-9941-2e3f2cfe1e94
/bin/sh: module: line 1: syntax error: unexpected end of file
/bin/sh: error importing function definition for `BASH_FUNC_module'
/bin/sh: mc: line 1: syntax error: unexpected end of file
/bin/sh: error importing function definition for `BASH_FUNC_mc'
Traceback (most recent call last):
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/ipykernel_launcher.py", line 15, in <module>
from ipykernel import kernelapp as app
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/ipykernel/__init__.py", line 2, in <module>
from .connect import *
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/ipykernel/connect.py", line 18, in <module>
import jupyter_client
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/jupyter_client/__init__.py", line 4, in <module>
from .connect import *
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/jupyter_client/connect.py", line 23, in <module>
import zmq
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/__init__.py", line 47, in <module>
from zmq import backend
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/backend/__init__.py", line 40, in <module>
reraise(*exc_info)
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/utils/sixcerpt.py", line 34, in reraise
raise value
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/backend/__init__.py", line 27, in <module>
_ns = select_backend(first)
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/backend/select.py", line 28, in select_backend
mod = __import__(name, fromlist=public_api)
File "/home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/backend/cython/__init__.py", line 6, in <module>
from . import (constants, error, message, context,
ImportError: /lib64/libpthread.so.0: version `GLIBC_2.12' not found (required by /home/shkifmjr/miniconda3/envs/py3_testxorca/lib/python3.6/site-packages/zmq/backend/cython/../../../../../libzmq.so.5)
Edited by Jan Klaus Rieck